acpype.topol.AbstractTopol
==========================

.. currentmodule:: acpype.topol

.. autoclass:: AbstractTopol
   :members:
   :show-inheritance:
   :inherited-members:

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~AbstractTopol.__init__
      ~AbstractTopol.balanceCharges
      ~AbstractTopol.checkFrcmod
      ~AbstractTopol.checkLeapLog
      ~AbstractTopol.checkSmiles
      ~AbstractTopol.checkXyzAndTopFiles
      ~AbstractTopol.convertPdbToMol2
      ~AbstractTopol.convertSmilesToMol2
      ~AbstractTopol.createACTopol
      ~AbstractTopol.createMolTopol
      ~AbstractTopol.delOutputFiles
      ~AbstractTopol.execAntechamber
      ~AbstractTopol.execObabel
      ~AbstractTopol.execParmchk
      ~AbstractTopol.execTleap
      ~AbstractTopol.getABCOEFs
      ~AbstractTopol.getAngles
      ~AbstractTopol.getAtoms
      ~AbstractTopol.getBonds
      ~AbstractTopol.getChirals
      ~AbstractTopol.getCoords
      ~AbstractTopol.getDihedrals
      ~AbstractTopol.getFlagData
      ~AbstractTopol.getResidueLabel
      ~AbstractTopol.guessCharge
      ~AbstractTopol.locateDat
      ~AbstractTopol.makeDir
      ~AbstractTopol.pickleSave
      ~AbstractTopol.printDebug
      ~AbstractTopol.printDebugQuoted
      ~AbstractTopol.printError
      ~AbstractTopol.printErrorQuoted
      ~AbstractTopol.printMess
      ~AbstractTopol.printWarn
      ~AbstractTopol.readMol2TotalCharge
      ~AbstractTopol.search
      ~AbstractTopol.setAtomType4Gromacs
      ~AbstractTopol.setProperDihedralsCoef
      ~AbstractTopol.setResNameCheckCoords
      ~AbstractTopol.signal_handler
      ~AbstractTopol.sortAtomsForGromacs
      ~AbstractTopol.writeCharmmTopolFiles
      ~AbstractTopol.writeCnsTopolFiles
      ~AbstractTopol.writeGroFile
      ~AbstractTopol.writeGromacsTop
      ~AbstractTopol.writeGromacsTopolFiles
      ~AbstractTopol.writeMdpFiles
      ~AbstractTopol.writePdb
      ~AbstractTopol.writePosreFile